Portfile

# $Id: Portfile 23053 2007-03-23 20:35:47Z pipping@macports.org $
PortSystem 1.0
name ncbi_tools
version 20060507
description blast is a set of tools for doing nucleotide and protein searches
maintainers mrt5@mac.com
categories science
platforms darwin
homepage http://www.ncbi.nlm.nih.gov/blast/
fetch.use_epsv no
master_sites ftp://ftp.ncbi.nlm.nih.gov/toolbox/ncbi_tools/
distfiles ncbi.tar.gz
checksums md5 1c00462385fbf382c99ff65f34c0d09a
worksrcdir
use_configure no
build.cmd './ncbi/make/makedis.csh'
build.target
set binaries "Psequin asn2ff asn2gb asn2idx asn2xml asndhuff asntool bl2bag.cgi bl2seq blast blast.REAL blast_cs.REAL blastall blastcl3 blastclust blastpgp cdscan checksub copymat ddv debruijn demo_regexp demo_regexp_grep dosimple entrcmd entrez2 errhdr fa2htgs fastacmd findspl formatdb formatrpsdb getfeat getmesh getpub getseq gil2bin idfetch impala indexpub makemat makeset megablast ncbisort nph-viewgif.cgi psiblast.REAL psiblast_cs.REAL rpsblast seedtop seqtest tbl2asn test_regexp testcore testobj testval udv vecscreen wblast2.REAL wblast2_cs.REAL"

set manpages "Nentrez.1 Psequin.1 asn2asn.1 asn2ff.1 asn2gb.1 asn2xml.1 asndhuff.1 asntool.1 bl2seq.1 blast.1 blastall.1 blastcl3.1 blastclust.1 blastpgp.1 cdscan.1 checksub.1 copymat.1 ddv.1 debruijn.1 entrcmd.1 entrez2.1 errhdr.1 fa2htgs.1 fastacmd.1 findspl.1 fmerge.1 formatdb.1 gbseqget.1 getfeat.1 getmesh.1 getpub.1 gil2bin.1 idfetch.1 impala.1 indexpub.1 makemat.1 makeset.1 megablast.1 netentcf.1 rpsblast.1 seedtop.1 tbl2asn.1 udv.1 vecscreen.1"


destroot {
xinstall -d 755 ${destroot}${prefix}/share/doc/${name}
file copy ${worksrcpath}/ncbi/doc ${destroot}${prefix}/share/doc/${name}
foreach binary ${binaries} {
xinstall -m 755 ${worksrcpath}/ncbi/bin/${binary} ${destroot}${prefix}/bin/
}
foreach manpage ${manpages} {
xinstall -m 444 ${worksrcpath}/ncbi/doc/man/${manpage} ${destroot}${prefix}/share/man/man1/
}
}

long_description ${description}